CESSHIV-1 database

General information on HIV-1 isolate

# 200

Accession number	AF443102
Name	00BW2036.1
Subtype	C
Country	Botswana
Sampling year	2000
Patient	20361

AF443102 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcag gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF110980(#146) AY074891(#161)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy