CESSHIV-1 database

General information on HIV-1 isolate

# 672

Accession number	AY586544
Name	R77
Subtype	CRF20_BG
Country	Spain (Cuba)
Sampling year	1999
Patient	R77

AY586544 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaactttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY586545(#673) AY586546(#674) AY586547(#675) AY900572(#638) AY900574(#639) AY900575(#640) AY900576(#641) AY900578(#1426) DQ020274(#754)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy