CESSHIV-1 database

General information on HIV-1 isolate

# 754

Accession number	DQ020274
Name	CB134
Subtype	CRF20_BG
Country	Cuba
Sampling year	2003
Patient	CB134

DQ020274 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaactttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY586544(#672) AY586545(#673) AY586546(#674) AY586547(#675) AY900572(#638) AY900574(#639) AY900575(#640) AY900576(#641) AY900578(#1426)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy