CESSHIV-1 database

General information on HIV-1 isolate

# 418

Accession number	AY727523
Name	04BR021
Subtype	C
Country	Brazil
Sampling year	2004

AY727523 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc atttttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF286228(#101) DQ369987(#653) EU448296(#1045) HM100716(#3316)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy