CESSHIV-1 database

General information on HIV-1 isolate

# 1442

Accession number	DQ853474
Name	14205_1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1362

DQ853474 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cataa-ttttg actagcggag gctagaaggg gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy