CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1442
Accession number DQ853474
Name 14205_1
SubtypeB
CountryUSA
Sampling year 1998
PatientPIC1362

DQ853474 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagaccctt ttagttagcg tagaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagta aaaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

DQ853437(#829) DQ853450(#832) DQ853463(#845) DQ853466(#1434) DQ853467(#1435) DQ853468(#1436) DQ853469(#1437) DQ853470(#1438) DQ853471(#1439) DQ853475(#1443)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy