CESSHIV-1 database

General information on HIV-1 isolate

# 1443

Accession number	DQ853475
Name	14201_1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1362

DQ853475 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagaccctt ttagttagcg tagaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagta aaaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

DQ853437(#829) DQ853450(#832) DQ853463(#845) DQ853466(#1434) DQ853467(#1435) DQ853468(#1436) DQ853469(#1437) DQ853470(#1438) DQ853471(#1439) DQ853474(#1442)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy