CESSHIV-1 database

General information on HIV-1 isolate

# 1443

Accession number	DQ853475
Name	14201_1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1362

DQ853475 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing Core poly(A) site

The primary sequence:

ccgggtctct ctggttagac cagatctga-c ctgggagctc tctggctagc tggggaaccc actgcttaag cctcaataaa gcttgccctg agtgcttcaa gtagtgtgtg cccatctgtt gtgtgactct ggtag

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy