CESSHIV-1 database

General information on HIV-1 isolate

# 1697

Accession number	EF178405
Name	MS2004_37_107
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (2870718)

EF178405 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY857022(#1620) AY857185(#1446) EF178303(#1445) EU786678(#1191)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy