CESSHIV-1 database

General information on HIV-1 isolate

# 1118

Accession number	EU697909
Name	J11456
Subtype	CRF43_02G
Country	Saudi Arabia
Sampling year	2003
Patient	J11456

EU697909 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aatt-ttttgc ctagcggagg ctagaaggag aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy