CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1118
Accession number EU697909
Name J11456
SubtypeCRF43_02G
CountrySaudi Arabia
Sampling year 2003
PatientJ11456

EU697909 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gtgaaagtta atagggactc gaaagcgaaa gtt---ccagaga agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012