CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2652
Accession number FJ496197
Name ZM247F_flA2
SubtypeC
CountryZambia
Sampling year 2003
PatientZM247F

FJ496197 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcgactgg tgagtacgcc gaatttttgt ctgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

FJ496195(#2650) FJ496199(#2654) FJ496202(#2657) FJ496203(#2658) FJ496204(#2659) FJ496206(#2665) FJ496207(#2666)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy