CESSHIV-1 database

General information on HIV-1 isolate

# 2654

Accession number	FJ496199
Name	ZM247F_flB9
Subtype	C
Country	Zambia
Sampling year	2003
Patient	ZM247F

FJ496199 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcgactgg tgagtacgcc gaatttttgt ctgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

FJ496195(#2650) FJ496197(#2652) FJ496202(#2657) FJ496203(#2658) FJ496204(#2659) FJ496206(#2665) FJ496207(#2666)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy