CESSHIV-1 database

General information on HIV-1 isolate

# 1853

Accession number	FJ771008
Name	06BR564
Subtype	F1
Country	Brazil
Sampling year	2006

FJ771008 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcgactgg tgagtacgcc aaa--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AY118160(#1851) FJ771007(#2761)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy