CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3335
Accession number HM026455
Name 06BR_FPS561
SubtypeBF1
CountryBrazil
Sampling year 2006
PatientFPS561

HM026455 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcacgcggca agaggcgagg gg-ggcgactg gtgagtacgc caatt-ttttg actagcggag gctagaagga gaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012