CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 162
Accession number K03454
Name ELI
SubtypeD
CountryDRC
Sampling year 1983
PatientELI

K03454 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcagcgactg gtgagtacgc taaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

A07108(#1103) A14116(#1106)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy