CESSHIV-1 database

General information on HIV-1 isolate

# 1317

Accession number	AF196753
Name	93SE42
Subtype	CRF02_AG
Country	Senegal
Sampling year	1993

AF196753 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gacggtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF096656(#1937) AJ866558(#539) AY932656(#2126) AY932700(#2170)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy