CESSHIV-1 database

General information on HIV-1 isolate

# 539

Accession number	AJ866558
Name	01IC-PCI127
Subtype	0209
Country	Cote d'Ivoire
Sampling year	2001
Patient	PCI127

AJ866558 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gacggtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF096656(#1937) AF196753(#1317) AY932656(#2126) AY932700(#2170)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy