CESSHIV-1 database

General information on HIV-1 isolate

# 1417

Accession number	AF378083
Name	ESP1_8
Subtype	Group O
Country	Spain (Equatorial Guinea)
Submitted to NCBI	2001
Patient	ESP1

AF378083 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cgctgcttaa cgctcaataa agcttgcctt gagtgag--aag cagtgtgtgc tcatctgttc a---accctggtg tctagagatc cctcagatca cttagactga agcagaaaat ctctagca

Isolates with identical sequences of region:

L20571(#9) L20587(#14)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy