CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1417
Accession number AF378083
Name ESP1_8
SubtypeGroup O
CountrySpain (Equatorial Guinea)
Submitted to NCBI 2001
PatientESP1

AF378083 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing Core poly(A) site

The primary sequence:

--gggtctcggt tagaggacca ggtctgagcc cgggagctcc ctggcctctg gctgaacccg ctgcttaacg ctcaataaag cttgccttga gtgag--aagca gtgtgtgctc atctgttca---a ccctggtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012