CESSHIV-1 database

General information on HIV-1 isolate

# 2270

Accession number	EU047600
Name	97CSR4_3094
Subtype	B
Country	South Korea (USA)
Sampling year	1997
Patient	HP-21(CSR)

EU047600 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg aaaaatctct agca

Isolates with identical sequences of region:

AF049494(#3429) EF370211(#2233) K02007(#20)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy