CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2270
Accession number EU047600
Name 97CSR4_3094
SubtypeB
CountrySouth Korea (USA)
Sampling year 1997
PatientHP-21(CSR)

EU047600 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa

Isolates with identical sequences of region:

DQ287288(#3474) DQ287289(#3293) DQ287290(#3302) DQ287291(#3303) DQ287292(#3304) DQ287293(#3305) DQ287294(#3306) DQ287306(#3001) DQ287310(#2993) EF370172(#2226) EF370173(#2227) EF370176(#1451) EF370180(#1454) EF370181(#1455) EF370211(#2233) EF370294(#2256) EU047603(#1623) EU047606(#1600) EU047610(#1813) EU047611(#1814) EU047612(#1815) EU047693(#1888)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy