CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1988
Accession number AY118155
Name 97TH87
SubtypeCRF01_AE
CountryThailand
Sampling year 1997
Patient97TH87

AY118155 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgtgttagga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtta aaagggactc gaaagcgaaa gtt---ccagaga agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012