CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1851
Accession number AY118160
Name 94BR77
SubtypeF1
CountryBrazil
Sampling year 1994
Patient94BR77

AY118160 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ctagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagaga agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012