CESSHIV-1 database

General information on HIV-1 isolate

# 1811

Accession number	EU047608
Name	03CSR3_3090
Subtype	B
Country	South Korea (USA)
Sampling year	2003
Patient	HP-21(CSR)

EU047608 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttatgtga ctctggtaac tagagatccc tcagacactc ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagga aaaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy