CESSHIV-1 database

General information on HIV-1 isolate

# 1811

Accession number	EU047608
Name	03CSR3_3090
Subtype	B
Country	South Korea (USA)
Sampling year	2003
Patient	HP-21(CSR)

EU047608 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF408631(#156) DQ837381(#753) EF363127(#969) EU047605(#1559)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy