CESSHIV-1 database

General information on HIV-1 isolate

# 969

Accession number	EF363127
Name	ES10-53
Subtype	B
Country	USA
Sampling year	2004
Patient	ES10

EF363127 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF408631(#156) DQ837381(#753) EU047605(#1559) EU047608(#1811)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy