CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2324
Accession number FJ614892
Name 00LKD9_4070
SubtypeCRF02_AG
CountrySouth Korea (Ghana)
Sampling year 2000
PatientLKD

FJ614892 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcaggccact ctaggctgcg ta-aaaatttc tagcagtggc gcccgaacag ggaccggaag ttaataggga ctcgaaagcg aaagtt---ccag agaagctctc tcgacgcagg gac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012