CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2481
Accession number L28913
Name 4C22
SubtypeB
CountryUSA
Submitted to NCBI 1994
Patient4

L28913 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacccct ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

L28883(#2451) L28895(#2463) L28898(#2466) L28902(#2470) L28903(#2471) L28908(#2476) L28912(#2480) L28917(#2485)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy