CESSHIV-1 database

General information on HIV-1 isolate

# 2485

Accession number	L28917
Name	4C27
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	4

L28917 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacccct ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

L28883(#2451) L28895(#2463) L28898(#2466) L28902(#2470) L28903(#2471) L28908(#2476) L28912(#2480) L28913(#2481)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy