CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2487
Accession number S69386
Name S69386
Subtype
Country
Submitted to NCBI 1994

S69386 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagatagtgt gtgcgatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaaggg aaaccagagg agctctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy