CESSHIV-1 database

General information on HIV-1 isolate

# 2741

Accession number	AB485638
Name	US2
Subtype	B
Country	USA
Sampling year	1991
Patient	US2

AB485638 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gaagctgcat ataagcagct gctttt-gcct gtactgggtc tctctggtta gaccagatct gagcctggga gctctctggc taactaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg gagaaaatct ctagca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy