CESSHIV-1 database

General information on HIV-1 isolate

# 2741

Accession number	AB485638
Name	US2
Subtype	B
Country	USA
Sampling year	1991
Patient	US2

AB485638 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttt-gcctgta ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

Isolates with identical sequences of region:

L28882(#2450) L28887(#2455) M58197(#3753)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy