CESSHIV-1 database

General information on HIV-1 isolate

# 3589

Accession number	AF102222
Name	UG6083
Subtype	D
Country	Uganda
Submitted to NCBI	1998
Patient	UG6083

AF102222 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttct-gcct gtactgggtc tctcttgttg gaccagat-tg agcccgggag ctctctggct agcgagggaa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt 

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy