CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3589
Accession number AF102222
Name UG6083
SubtypeD
CountryUganda
Submitted to NCBI 1998
PatientUG6083

AF102222 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gctaaccctc agatgctgca tataagcagc tgcttct-gcc tgtactgggt ctctcttgtt ggaccagat-t gagcccggga gctctctggc tagcgaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg t

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012