CESSHIV-1 database

General information on HIV-1 isolate

# 1322

Accession number	AF196759
Name	93GH16
Subtype	CRF02_AG
Country	Ghana
Sampling year	1993

AF196759 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tctcgcctgt actgggtctc ttttgctaga ccagatttga gcctgggagc tctctgacta gcagaggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

FJ614941(#2358)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy