CESSHIV-1 database

General information on HIV-1 isolate

# 2358

Accession number	FJ614941
Name	00MHI10_4044s
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2000
Patient	MHI

FJ614941 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tctcgcctgt actgggtctc ttttgctaga ccagatttga gcctgggagc tctctgacta gcagaggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF196759(#1322)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy