CESSHIV-1 DATABASE
Control Elements Secondary Structures of HIV-1 genome
About CESSHIV-1 database
PBS region
Secondary structures
... by Accession number
... by Assigned number
Frequent base changes
PBS hairpins
U5 hairpins
DIS, SD and Psi region
Secondary structure
... by Accession number
... by Assigned number
DIS variants
SD variants
Psi variants
Evolution schemes
3' poly(A) region
USE region
... by Accession number
... by Assigned number
USE domain, TAR, polyA
... by Accession number
... by Assigned number
USE, TAR, polyA
... by Accession number
... by Assigned number
123 nt 3' terminus
... by Accession number
... by Assigned number
Core poly(A) site
... by Accession number
... by Assigned number
Complete poly(A) region
... by Accession number
... by Assigned number
227 nt 3' terminus
... by Accession number
... by Assigned number
Publications
Optimal and suboptimal structures of most frequent DIS variants above the error level 0.5%
[ ΔΔG in kcal/mole is given in brackets ]
DIS
Lai
DIS
Lai
21G,23A
DIS
Lai
14A15,21U
DIS
Lai
14d
DIS
Lai
21G
DIS
Lai
23A
DIS
Lai
14d,23A
DIS
Mal
DIS
Mal
13A14
DIS
Mal
21G
DIS
Mal
23G
DIS
C
DIS
C
+ AG
DIS
C
14A15
DIS
C
27G
DIS
F
DIS
F
23A
DIS
Trans
DIS
Trans
+ GGG