PBS hairpins
Optimal structures of the hairpin containing PBS signal frequently formed in HIV-1 isolates of B, C, D, and F1 subtypes (see Publications [6]). The PBS signal is indicated by double line. Base changes as compared to RefSec are squared.
CESSHIV-1 DATABASE
Control Elements Secondary Structures of HIV-1 genome-
- Secondary structures
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- Secondary structure
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- USE region
- USE domain, TAR, polyA
- USE, TAR, polyA
- 123 nt 3' terminus
- Core poly(A) site
- Complete poly(A) region
- 227 nt 3' terminus
STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012
Institute of Molecular Biology and Genetics 2008-2012