CESSHIV-1 database

General information on HIV-1 isolate

# 1614

Accession number	EF178327
Name	MS2004_37_029
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (4860293)

EF178327 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaat-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB565478(#3284) AY857057(#1635) EF637048(#987) EU047641(#1839) GU733713(#3313) GU733714(#3319) GU733715(#3320) GU733716(#3321) GU733717(#3322)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy