CESSHIV-1 database

General information on HIV-1 isolate

# 987

Accession number	EF637048
Name	BREPM1038
Subtype	B
Country	Brazil
Sampling year	2003
Patient	1038

EF637048 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaat-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB565478(#3284) AY857057(#1635) EF178327(#1614) EU047641(#1839) GU733713(#3313) GU733714(#3319) GU733715(#3320) GU733716(#3321) GU733717(#3322)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy