CESSHIV-1 database

General information on HIV-1 isolate

# 3322

Accession number	GU733717
Name	N-2
Subtype	B
Country	USA
Sampling year	2009
Patient	patient(36090)

GU733717 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaat-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB565478(#3284) AY857057(#1635) EF178327(#1614) EF637048(#987) EU047641(#1839) GU733713(#3313) GU733714(#3319) GU733715(#3320) GU733716(#3321)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy