CESSHIV-1 database

General information on HIV-1 isolate

# 1677

Accession number	EF178349
Name	MS2004_37_051
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (1426482)

EF178349 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AB371848(#3489) AY586542(#670) AY856988(#1604) EF363122(#964) EF363123(#965) EF370378(#1799) GU362886(#3845) GU595154(#3323)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy