CESSHIV-1 database

General information on HIV-1 isolate

# 3845

Accession number	GU362886
Name	X2574_2
Subtype	B
Country	Spain (Uruguay)
Sampling year	2008
Patient	X2574

GU362886 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AB371848(#3489) AY586542(#670) AY856988(#1604) EF178349(#1677) EF363122(#964) EF363123(#965) EF370378(#1799) GU595154(#3323)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy