CESSHIV-1 database

General information on HIV-1 isolate

# 965

Accession number	EF363123
Name	ES1-20
Subtype	B
Country	USA
Sampling year	2000
Patient	ES1

EF363123 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AB371848(#3489) AY586542(#670) AY856988(#1604) EF178349(#1677) EF363122(#964) EF370378(#1799) GU362886(#3845) GU595154(#3323)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy