CESSHIV-1 database

General information on HIV-1 isolate

# 2796

Accession number	EU170154
Name	luBF_02_03
Subtype	CRF42_BF
Country	Luxembourg
Sampling year	2003

EU170154 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY560110(#384) EU170143(#2785) EU170151(#2793)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy