CESSHIV-1 database

General information on HIV-1 isolate

# 2796

Accession number	EU170154
Name	luBF_02_03
Subtype	CRF42_BF
Country	Luxembourg
Sampling year	2003

EU170154 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing Core poly(A) site

The primary sequence:

--gggtctctct tgttrgacca gatttgagcc tgggagctct ctggctagct agggaaccca ctgcttaagc ctcaataaag cttgccttga gtgcttcaag tagtgtgtgc ccgtctgttg tgtgactctg gtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy