CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 129
Accession number AF110963
Name C-96BW04.07
SubtypeC
CountryBotswana
Sampling year 1996
Patient96BW04

AF110963 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttcgt ggtagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AF110965(#131) AF110966(#132) AF405202(#1985)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy