CESSHIV-1 database

General information on HIV-1 isolate

# 1985

Accession number	AF405202
Name	97ZM057F
Subtype	C
Country	Zambia
Sampling year	1997
Patient	057F

AF405202 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttcgt ggtagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AF110963(#129) AF110965(#131) AF110966(#132)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy