CESSHIV-1 database

General information on HIV-1 isolate

# 131

Accession number	AF110965
Name	C-96BW04.09
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW04

AF110965 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttcgt ggtagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AF110963(#129) AF110966(#132) AF405202(#1985)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy